PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021724-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 856aa    MW: 95713.8 Da    PI: 4.7223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021724-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.2e-09796850147
                         TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg...kgRtlkqcksrwqky 47 
                         + +WT+eE+e+l+++v+++ +       Wk+I +  g     Rt  ++k++w+++
  WALNUT_00021724-RA 796 KVPWTAEEEEILKEGVQKFSNTndrniPWKKILEFGGdvlHIRTTVDLKDKWRNL 850
                         579************************************989***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.42E-10469520IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.716469518IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.103.1E-9470518IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.5E-7471516IPR001965Zinc finger, PHD-type
PROSITE patternPS013590472515IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.0E-12791852IPR009057Homeodomain-like
PROSITE profilePS500907.364791851IPR017877Myb-like domain
SuperFamilySSF466891.05E-11793852IPR009057Homeodomain-like
SMARTSM007173.3E-6795853IPR001005SANT/Myb domain
PfamPF002493.5E-7796850IPR001005SANT/Myb domain
CDDcd116601.39E-15797852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MDEASGCASS LAWIWVIEAL ASYKEVDVSI LHDLIEMVPE LPDNLGKNMR EMLALRCLEV  60
LFGPSNGITK DGCSSLASKV GFDMSKSCED VLEHIVQETS LSDLKMAGLE LSNCNAHPFI  120
IHKRACMPKL ALQQLKDSLL DGSHPYVDTL KVRSGLANAG EIVPVYNVKH SALTQRVNKS  180
CLDTQHMGPK GNVMPRIVEG RKKLLENNLC TGILLDSKRK RNTLATENMD EDFHENRNRL  240
DACDDPNINA KRQKQFASSS VQSREVNPVP LNGTESLEFP SERVMLVAGT ESCGLAKDQR  300
GSLEEVRVLG DNHDEHTASM RCGHIADDEF NHIESDIPDV STTMPLDTFG DEPHQKISVD  360
EVGDDREQCA ELRTSSGPLL VKTRGNESQC DYEHQFQLKA PCSASLNGCK QKIIAHEAEE  420
NMDRCCEAGT SSDSEGYHYG NIDVFFEKNE FLSSQATNSY DPSTSWTFQN LCMKCNEGGQ  480
LLVCSTSNCP VMVHENCLGS SPSFDNNGKF YCPFCAYSLS ISEYLVAKKK ASLARKELTL  540
FLGMGLDQKP EELTKTLHRD EDLLVKSREN GYLEERVNGQ TGHDGEHADE VNNFHCRRSV  600
DDKQQAEPSA LCDNVNSVLR EEEPAEITRT LNVLTEEKEG QVNSIQVVRV VEGDNREAAE  660
HDGHNSSCRN TDVVPVNQSH VEEELQQEVL EQQIAYPPDE PVCVHDTHAD GENLSCRNTG  720
VIPGIQRHSK EQIQQEVSEQ QIAEPTEEPV CALDAYAEDI SEEENEKSII SNYSKRVPKQ  780
ERHDTYPASP QLRRKKVPWT AEEEEILKEG VQKFSNTNDR NIPWKKILEF GGDVLHIRTT  840
VDLKDKWRNL CKVGPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200220RKKLLENNLCTGILLDSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-08MYB_related family protein